The mDOT Center

Transforming health and wellness via temporally-precise mHealth interventions
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TR&D3: Translation

mDOT Center > Research Projects > TR&D3: Translation

Translation of Temporally Precise mHealth via Efficient and Embeddable Privacy-aware Biomarker Implementations

Tinyodom: Hardware-Aware Efficient Neural Inertial Navigation
Authors:
Publication Venue:

ACM on Interactive, Mobile, Wearable, and Ubiquitous Technologies

Publication Date:

July 7, 2022

Keywords:
robotics, embedded systems, inertial odometry, dead-reckoning, sequence-learning, resource-constrained devices, neural architecture search, hardware-in-the-loop, machine-learning, deep-learning, tracking
Abstract:
Deep inertial sequence learning has shown promising odometric resolution over model-based approaches for trajectory estimation in GPS-denied environments. However, existing neural inertial dead-reckoning frameworks are not suitable for real-time deployment on ultra-resource-constrained (URC) devices due to substantial memory, power, and compute bounds. Current deep inertial odometry techniques also suffer from gravity pollution, high-frequency inertial disturbances, varying sensor orientation, heading rate singularity, and failure in altitude estimation. In this paper, we introduce TinyOdom, a framework for training and deploying neural inertial models on URC hardware. TinyOdom exploits hardware and quantization-aware Bayesian neural architecture search (NAS) and a temporal convolutional network (TCN) backbone to train lightweight models targetted towards URC devices. In addition, we propose a magnetometer, physics, and velocity-centric sequence learning formulation robust to preceding inertial perturbations. We also expand 2D sequence learning to 3D using a model-free barometric g-h filter robust to inertial and environmental variations. We evaluate TinyOdom for a wide spectrum of inertial odometry applications and target hardware against competing methods. Specifically, we consider four applications: pedestrian, animal, aerial, and underwater vehicle dead-reckoning. Across different applications, TinyOdom reduces the size of neural inertial models by 31× to 134× with 2.5m to 12m error in 60 seconds, enabling the direct deployment of models on URC devices while still maintaining or exceeding the localization resolution over the state-of-the-art. The proposed barometric filter tracks altitude within ±0.1m and is robust to inertial disturbances and ambient dynamics. Finally, our ablation study shows that the introduced magnetometer, physics, and velocity-centric sequence learning formulation significantly improve localization performance even with notably lightweight models.
TL;DR:

In this paper, we introduce TinyOdom, a framework for training and deploying neural inertial models on URC hardware.

Auritus: An Open-Source Optimization Toolkit for Training & Development of Human Movement Models & Filters Using Earables
Authors:
Publication Venue:

ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies

Publication Date:

July 7, 2022

Keywords:

earable, network architecture search, neural networks, machine learning, datasets, filters, human activity, head-pose, TinyML, optimization, hardware-in-the-loop

Abstract:
Smart ear-worn devices (called earables) are being equipped with various onboard sensors and algorithms, transforming earphones from simple audio transducers to multi-modal interfaces making rich inferences about human motion and vital signals. However, developing sensory applications using earables is currently quite cumbersome with several barriers in the way. First, time-series data from earable sensors incorporate information about physical phenomena in complex settings, requiring machine-learning (ML) models learned from large-scale labeled data. This is challenging in the context of earables because large-scale open-source datasets are missing. Secondly, the small size and compute constraints of earable devices make on-device integration of many existing algorithms for tasks such as human activity and head-pose estimation difficult. To address these challenges, we introduce Auritus, an extendable and open-source optimization toolkit designed to enhance and replicate earable applications. Auritus serves two primary functions. Firstly, Auritus handles data collection, pre-processing, and labeling tasks for creating customized earable datasets using graphical tools. The system includes an open-source dataset with 2.43 million inertial samples related to head and full-body movements, consisting of 34 head poses and 9 activities from 45 volunteers. Secondly, Auritus provides a tightly-integrated hardware-in-the-loop (HIL) optimizer and TinyML interface to develop lightweight and real-time machine-learning (ML) more »
TL;DR:
We introduce Auritus, an extendable and open-source optimization toolkit designed to enhance and replicate earable applications.
THIN-Bayes: Platform-Aware Machine Learning for Low-End IoT Devices
Authors:
Publication Venue:

tinyML Summit

Publication Date:

March 2022

Keywords:

neural networks, edge computing, IoT platforms, AI-based inference, TinyML, activity detection models

Abstract:
Neural networks have been shown to provide rich and complicated inferences from time-series data over first-principle approaches. However, with inference moving to the edge, and IoT platforms shrinking, realizing AI-based inference on-board is challenging. While communication bandwidth, energy budget, and form factor of these platforms have gone down, the workload and complexity of neural networks have skyrocketed, requiring systematic software and tools to guide on-board TinyML implementation. Keeping the challenges in mind, we developed THIN-Bayes, a completely open-source black-box optimization framework for training and deploying ultra-lightweight models on extremely resource-constrained platforms using TensorFlow Lite Micro. THIN-Bayes is designed based on three insights: 1. hardware proxies deviate significantly from true values for low-end microcontrollers, thereby requiring exact hardware metrics; 2. the linear programming formulation stemming from hardware-in-the-loop neural architecture search is not gradient-friendly. 3. the type of model should also be a hyperparameter for low-end microcontrollers. Based on ARM Mango, THIN-Bayes features a tightly integrated ultra-lightweight model zoo and a gradient-free, hardware-in-the-loop, and parallelizable Bayesian neural architecture search framework, receiving hardware metrics directly from the target hardware during optimization. We demonstrate the efficacy of our framework by optimizing neural-inertial navigation models and earable human activity detection models for microcontrollers, two of the most challenging applications of inertial sensors. The inertial-odometry models found by THIN-Bayes are 31-134x smaller than state-of-the-art neural-inertial navigation models, while the activity detection models are 98x smaller and 6% more accurate over the state-of-the-art. THIN-Bayes is an important step towards bringing in challenging AI applications to TinyML platforms.
TL;DR:
We developed THIN-Bayes, a completely open-source black-box optimization framework for training and deploying ultra-lightweight models on extremely resource-constrained platforms using TensorFlow Lite Micro.
CardiacGen: A Hierarchical Deep Generative Model for Cardiac Signals
Authors:
Publication Venue:

Machine Learning for Health (ML4H)

Publication Date:

November 15, 2022

Keywords:

generative model, electrocardiogram, data augmentation

Abstract:

We present CardiacGen, a Deep Learning framework for generating synthetic but physiologically plausible cardiac signals like ECG. Based on the physiology of cardiovascular system function, we propose a modular hierarchical generative model and impose explicit regularizing constraints for training each module using multi-objective loss functions. The model comprises 2 modules, an HRV module focused on producing realistic Heart-Rate-Variability characteristics and a Morphology module focused on generating realistic signal morphologies for different modalities. We empirically show that in addition to having realistic physiological features, the synthetic data from CardiacGen can be used for data augmentation to improve the performance of Deep Learning based classifiers.

TL;DR:

We present CardiacGen, a Deep Learning framework for generating synthetic but physiologically plausible cardiac signals like ECG.

Robust Finger Interactions with COTS Smartwatches via Unsupervised Siamese Adaptation
Authors:
Publication Venue:

ACM Symposium on User
Interface Software and Technology (2023)

Publication Date:

October 29, 2023

Keywords:

gesture recognition, finger interaction, vibration sensing, unsupervised adversarial training

Abstract:

Wearable devices like smartwatches and smart wristbands have gained substantial popularity in recent years. However, their small interfaces create inconvenience and limit computing functionality. To fill this gap, we propose ViWatch, which enables robust finger interactions under deployment variations, and relies on a single IMU sensor that is ubiquitous in COTS smartwatches. To this end, we design an unsupervised Siamese adversarial learning method. We built a real-time system on commodity smartwatches and tested it with over one hundred volunteers. Results show that the system accuracy is about 97% over a week. In addition, it is resistant to deployment variations such as different hand shapes, finger activity strengths, and smartwatch positions on the wrist. We also developed a number of mobile applications using our interactive system and conducted a user study where all participants preferred our unsupervised approach to supervised calibration. The demonstration of ViWatch is shown at https://youtu.be/N5-ggvy2qfI.

TL;DR:
We propose ViWatch, which enables robust finger interactions under deployment variations, and relies on a single IMU sensor that is ubiquitous in COTS smartwatches. To this end, we design an unsupervised Siamese adversarial learning method.
TinyNS: Platform-Aware Neurosymbolic Auto Tiny Machine Learning
Authors:
Publication Venue:

ACM Transactions on Embedded Computing Systems (2023)

Publication Date:

May 31, 2023

Keywords:

neurosymbolic, neural architecture search, TinyML, AutoML, bayesian, platform-aware

Abstract:

Machine learning at the extreme edge has enabled a plethora of intelligent, time-critical, and remote applications. However, deploying interpretable artificial intelligence systems that can perform high-level symbolic reasoning and satisfy the underlying system rules and physics within the tight platform resource constraints is challenging. In this paper, we introduce TinyNS, the first platform-aware neurosymbolic architecture search framework for joint optimization of symbolic and neural operators. TinyNS provides recipes and parsers to automatically write microcontroller code for five types of neurosymbolic models, combining the context awareness and integrity of symbolic techniques with the robustness and performance of machine learning models. TinyNS uses a fast, gradient-free, black-box Bayesian optimizer over discontinuous, conditional, numeric, and categorical search spaces to find the best synergy of symbolic code and neural networks within the hardware resource budget. To guarantee deployability, TinyNS talks to the target hardware during the optimization process. We showcase the utility of TinyNS by deploying microcontroller-class neurosymbolic models through several case studies. In all use cases, TinyNS outperforms purely neural or purely symbolic approaches while guaranteeing execution on real hardware.

TL;DR:

We introduce TinyNS, the first platform-aware neurosymbolic architecture search framework for joint optimization of symbolic and neural operators.

Automated Detection of Stressful Conversations Using Wearable Physiological & Inertial Sensors
Authors:
Publication Venue:

Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies

Keywords:

stressful conversations, stress detection, wearables, physiological sensors, intertial sensors, 

Publication Date:

December 2020

Abstract:

Stressful conversation is a frequently occurring stressor in our daily life. Stressors not only adversely affect our physical and mental health but also our relationships with family, friends, and coworkers. In this paper, we present a model to automatically detect stressful conversations using wearable physiological and inertial sensors. We conducted a lab and a field study with cohabiting couples to collect ecologically valid sensor data with temporally-precise labels of stressors. We introduce the concept of stress cycles, i.e., the physiological arousal and recovery, within a stress event. We identify several novel features from stress cycles and show that they exhibit distinguishing patterns during stressful conversations when compared to physiological response due to other stressors. We observe that hand gestures also show a distinct pattern when stress occurs due to stressful conversations. We train and test our model using field data collected from 38 participants. Our model can determine whether a detected stress event is due to a stressful conversation with an F1-score of 0.83, using features obtained from only one stress cycle, facilitating intervention delivery within 3.9 minutes since the start of a stressful conversation.

TL;DR:

In this paper, we present a model to automatically detect stressful conversations using wearable physiological and intertial sensors.

mTeeth: Identifying Brushing Teeth Surfaces Using Wrist-Worn Inertial Sensors
Authors:
Publication Venue:

Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies

Keywords:

mHealth, brushing detection, flossing detection, hand-to-mouth gestures

Publication Date:

June 2021

Related Project:
Abstract:

Ensuring that all the teeth surfaces are adequately covered during daily brushing can reduce the risk of several oral diseases. In this paper, we propose the mTeeth model to detect teeth surfaces being brushed with a manual toothbrush in the natural free-living environment using wrist-worn inertial sensors. To unambiguously label sensor data corresponding to different surfaces and capture all transitions that last only milliseconds, we present a lightweight method to detect the micro-event of brushing strokes that cleanly demarcates transitions among brushing surfaces. Using features extracted from brushing strokes, we propose a Bayesian Ensemble method that leverages the natural hierarchy among teeth surfaces and patterns of transition among them. For training and testing, we enrich a publicly-available wrist-worn inertial sensor dataset collected from the natural environment with time-synchronized precise labels of brushing surface timings and moments of transition. We annotate 10,230 instances of brushing on different surfaces from 114 episodes and evaluate the impact of wide between-person and within-person between-episode variability on machine learning model’s performance for brushing surface detection.

TL;DR:

In this paper, we propose the mTeeth model to detect teeth surfaces being brushed with a manual toothbrush in the natural free-living environment using wrist-worn inertial sensors.

Bayesian Sparse Blind Deconvolution Using MCMC Methods Based on Normal-Inverse-Gamma Prior
Authors:
Publication Venue:

IEEE Transactions on Signal Processing

Publication Date:

March 3, 2022

Keywords:
Bayes methods, computational modeling, deconvolution, distortion, probabilistic logic, Monte Carlo methods, estimation
Abstract:

Bayesian estimation methods for sparse blind deconvolution problems conventionally employ Bernoulli-Gaussian (BG) prior for modeling sparse sequences and utilize Markov Chain Monte Carlo (MCMC) methods for the estimation of unknowns. However, the discrete nature of the BG model creates computational bottlenecks, preventing efficient exploration of the probability space even with the recently proposed enhanced sampler schemes. To address this issue, we propose an alternative MCMC method by modeling the sparse sequences using the Normal-Inverse-Gamma (NIG) prior. We derive effective Gibbs samplers for this prior and illustrate that the computational burden associated with the BG model can be eliminated by transferring the problem into a completely continuous-valued framework. In addition to sparsity, we also incorporate time and frequency domain constraints on the convolving sequences. We demonstrate the effectiveness of the proposed methods via extensive simulations and characterize computational gains relative to the existing methods that utilize BG modeling.

TL;DR:
We propose an alternative MCMC method by modeling the sparse sequences using the Normal-Inverse-Gamma (NIG) prior. We derive effective Gibbs samplers for this prior and illustrate that the computational burden associated with the BG model can be eliminated by transferring the problem into a completely continuous-valued framework.
Machine Learning for Microcontroller-Class Hardware--A Review
Authors:
Publication Venue:

IEEE Sensors Journal

Publication Date:

November 15, 2022

Keywords:

feature projection, Internet of Things, machine learning, microcontrollers, model compression, neural architecture search, neural networks, optimization, sensors, TinyML

Abstract:
The advancements in machine learning opened a new opportunity to bring intelligence to the low-end Internet-of-Things nodes such as microcontrollers. Conventional machine learning deployment has high memory and compute footprint hindering their direct deployment on ultra resource-constrained microcontrollers. This paper highlights the unique requirements of enabling onboard machine learning for microcontroller class devices. Researchers use a specialized model development workflow for resource-limited applications to ensure the compute and latency budget is within the device limits while still maintaining the desired performance. We characterize a closed-loop widely applicable workflow of machine learning model development for microcontroller class devices and show that several classes of applications adopt a specific instance of it. We present both qualitative and numerical insights into different stages of model development by showcasing several use cases. Finally, we identify the open research challenges and unsolved questions demanding careful considerations moving forward.
TL;DR:

This paper highlights the unique requirements of enabling onboard machine learning for microcontroller class devices. We characterize a closed-loopwidely applicable workflow of ML model development for microcontroller-class devices and show that several classes of applications adopt a specific instance of it.

Removing Antenna Effects Using an Invertible Neural Network for Improved Estimation of Multilayered Tissue Profiles Using UWB Radar
Authors:
Publication Venue:

2023 IEEE International Symposium on Antennas and Propagation and USNC-URSI Radio Science Meeting (AP-S/URSI). pp. 53–54.

Publication Date:

July 23-28, 2023

Keywords:

antenna measurements, three-dimensional displays, neural networks, transfer functions, radar antennas, nonhomogeneous media, ultra wideband antennas

Abstract:

Ultrawideband (UWB) radar sensors are an emerging biosensing modality that can be used to assess the dielectric properties of internal tissues. Antenna effects, including antenna body interactions limit the sensors ability to isolate the weak returns from the internal tissues. In this paper we develop a data driven calibration method for recovering Green’s function of the multilayered media model of the tissue profiles using an Invertible Neural Network (INN). The proposed INN structure is trained to invert the antenna transfer function to form estimates of the Green’s function modeling returns from internal tissues. We use simulation experiments to assess the effectiveness of the trained INN in antenna transfer function inversion.

TL;DR:

In this paper we develop a data driven calibration method for recovering Green’s function of the multilayered media model of the tissue profiles using an Invertible Neural Network (INN).

The Validity of MotionSense HRV in Estimating Sedentary Behavior and Physical Activity under Free-Living and Simulated Activity Settings
Authors:
Publication Venue:

Sensors (Basel)

Keywords:

MotionSense HRV, accelerometer, mobile health, physical activity, sedentary behavior

Publication Date:

February 18, 2021

Related Projects:
Abstract:

MotionSense HRV is a wrist-worn accelerometery-based sensor that is paired with a smartphone and is thus capable of measuring the intensity, duration, and frequency of physical activity (PA). However, little information is available on the validity of the MotionSense HRV. Therefore, the purpose of this study was to assess the concurrent validity of the MotionSense HRV in estimating sedentary behavior (SED) and PA. A total of 20 healthy adults (age: 32.5 ± 15.1 years) wore the MotionSense HRV and ActiGraph GT9X accelerometer (GT9X) on their non-dominant wrist for seven consecutive days during free-living conditions. Raw acceleration data from the devices were summarized into average time (min/day) spent in SED and moderate-to-vigorous PA (MVPA). Additionally, using the Cosemed K5 indirect calorimetry system (K5) as a criterion measure, the validity of the MotionSense HRV was examined in simulated free-living conditions. Pearson correlations, mean absolute percent errors (MAPE), Bland-Altman (BA) plots, and equivalence tests were used to examine the validity of the MotionSense HRV against criterion measures. The correlations between the MotionSense HRV and GT9X were high and the MAPE were low for both the SED (r = 0.99, MAPE = 2.4%) and MVPA (r = 0.97, MAPE = 9.1%) estimates under free-living conditions. BA plots illustrated that there was no systematic bias between the MotionSense HRV and criterion measures. The estimates of SED and MVPA from the MotionSense HRV were significantly equivalent to those from the GT9X; the equivalence zones were set at 16.5% for SED and 29% for MVPA. The estimates of SED and PA from the MotionSense HRV were less comparable when compared with those from the K5. The MotionSense HRV yielded comparable estimates for SED and PA when compared with the GT9X accelerometer under free-living conditions. We confirmed the promising application of the MotionSense HRV for monitoring PA patterns for practical and research purposes.

TL;DR:

The purpose of this study was to assess the concurrent validity of the MotionSense HRV in estimating sedentary behavior (SED) and PA.

WristPrint: Characterizing User Re-identification Risks from Wrist-Worn Accelerometry Data
Authors:
Publication Venue:

International Conference on Learning Representations (ICLR)

Publication Date:

November 13, 2021

Keywords:

privacy, user re-identification, wrist-worn accelerometers

Abstract:
Public release of wrist-worn motion sensor data is growing. They enable and accelerate research in developing new algorithms to passively track daily activities, resulting in improved health and wellness utilities of smartwatches and activity trackers. But, when combined with sensitive attribute inference attack and linkage attack via re-identification of the same user in multiple datasets, undisclosed sensitive attributes can be revealed to unintended organizations with potentially adverse consequences for unsuspecting data contributing users. To guide both users and data collecting researchers, we characterize the re-identification risks inherent in motion sensor data collected from wrist-worn devices in users’ natural environment. For this purpose, we use an open-set formulation, train a deep learning architecture with a new loss function, and apply our model to a new data set consisting of 10 weeks of daily sensor wearing by 353 users. We find that re-identification risk increases with an increase in the activity intensity. On average, such risk is 96% for a user when sharing a full day of sensor data.
TL;DR:

We characterize the re-identification risks inherent in motion sensor data collected from wrist-worn devices in users’ natural environment. We use an open-set formulation, train a deep learning architecture with a new loss function, and apply our model to a new data set.

Aerogel: Lightweight Access Control Framework for WebAssembly-Based Bare-Metal IoT Devices
Authors:
Publication Venue:

IEEE/ACM Symposium on Edge Computing (SEC)

Publication Date:

December 14, 2021

Keywords:

software security engineering, mobile platform security

Abstract:

Application latency requirements, privacy, and security concerns have naturally pushed computing onto smartphone and IoT devices in a decentralized manner. In response to these demands, researchers have developed micro-runtimes for WebAssembly (Wasm) on IoT devices to enable streaming applications to a runtime that can run the target binaries that are independent of the device. However, the migration of Wasm and the associated security research has neglected the urgent needs of access control on bare-metal, memory management unit (MMU)-less IoT devices that are sensing and actuating upon the physical environment. This paper presents Aerogel, an access control framework that addresses security gaps between the bare-metal IoT devices and the Wasm execution environment concerning access control for sensors, actuators, processor energy usage, and memory usage. In particular, we treat the runtime as a multi-tenant environment, where each Wasm-based application is a tenant. We leverage the inherent sandboxing mechanisms of Wasm to enforce the access control policies to sensors and actuators without trusting the bare-metal operating system. We evaluate our approach on a representative IoT development board: a cortexM4 based development board (nRF52840). Our results show that Aerogel can effectively enforce compute resource and peripheral access control policies while introducing as little as 0.19% to 1.04% runtime overhead and consuming only 18.8% to 45.9% extra energy.

TL;DR:

This paper presents Aerogel, an access control framework that addresses security gaps between the bare-metal IoT devices and the Wasm execution environment concerning access control for sensors, actuators, processor energy usage, and memory usage.

Protecting User Data Privacy with Adversarial Perturbations
Authors:
Publication Venue:

Proceedings of the 20th International Conference on Information Processing in Sensor Networks, Pages 386-387

Keywords:

privacy, computing methodologies, machine learning, neural networks

Publication Date:

May 18, 2021

Abstract:

The increased availability of on-body sensors gives researchers access to rich time-series data, many of which are related to human health conditions. Sharing such data can allow cross-institutional collaborations that create advanced data-driven models to make inferences on human well-being. However, such data are usually considered privacy-sensitive, and publicly sharing this data may incur significant privacy concerns. In this work, we seek to protect clinical time-series data against membership inference attacks, while maximally retaining the data utility. We achieve this by adding an imperceptible noise to the raw data. Known as adversarial perturbations, the noise is specially trained to force a deep learning model to make inference mistakes (in our case, mispredicting user identities). Our preliminary results show that our solution can better protect the data from membership inference attacks than the baselines, while succeeding in all the designed data quality checks.

TL;DR:

In this work, we seek to protect clinical time-series data against membership inference attacks, while maximally retaining the data utility. 

Tinyodom: Hardware-Aware Efficient Neural Inertial Navigation
Authors:
Publication Venue:

ACM on Interactive, Mobile, Wearable, and Ubiquitous Technologies

Publication Date:

July 7, 2022

License:
Languages:

C++

C

Jupyter Notebook

Python

Auritus: An Open-Source Optimization Toolkit for Training & Development of Human Movement Models & Filters Using Earables
Authors:
Publication Venue:

ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies

Publication Date:

July 7, 2022

License:
Languages:

C++

C

Python

MATLAB

Jupyter Notebook

THIN-Bayes: Platform-Aware Machine Learning for Low-End IoT Devices

https://github.com/ARM-software/mango/tree/main/examples/THIN-Bayes

Authors:
Publication Venue:

tinyML Summit

Publication Date:

March 2022

License:
Languages:

Python

CardiacGen: A Hierarchical Deep Generative Model for Cardiac Signals
TinyNS: Platform-Aware Neurosymbolic Auto Tiny Machine Learning
Authors:
Publication Venue:

ACM Transactions on Embedded Computing Systems (2023)

Publication Date:

May 31, 2023

License:
Languages:

C

C++

Assembly

Python

CMake

Makefile

Bayesian Sparse Blind Deconvolution Using MCMC Methods Based on Normal-Inverse-Gamma Prior


https://github.com/burakcivek/BayesianSparseBlindDeconvolution
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Recent commits:

Authors:
Publication Venue:

IEEE Transactions on Signal Processing

Publication Date:

March 3, 2022

Language:

MATLAB

The Validity of MotionSense HRV in Estimating Sedentary Behavior and Physical Activity under Free-Living and Simulated Activity Settings
Authors:
Publication Venue:

Sensors (Basel)

Publication Date:

February 18, 2021

License:
Languages:

Jupyter Notebook

Python

Shell

WristPrint: Characterizing User Re-identification Risks from Wrist-Worn Accelerometry Data
Auritus: An Open-Source Optimization Toolkit for Training & Development of Human Movement Models & Filters Using Earables

The Auritus dataset has 2.43 million inertial samples related to head and full-body movements, consisting of 34 head poses and 9 activities from 45 volunteers.  There are three main folders in the dataset, namely Activity DetectionSimple Head Pose and Complex Head Pose. It also contains physiological information about participants in the file Participant_Info.csv, target information for simple and complex head pose in the file HP_target_info.csv, and the IRB approval in the file IRB_Approval.pdf. Simple head pose corresponds to head movements from a origin marker to a target marker and back. Complex head pose corresponds to head movements from a origin marker to target marker A, target marker A to target marker B, and target marker B to origin. 

 

Activity Detection

Complex Head Pose

Simple Head Pose

Authors:
Publication Venue:

ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies

Publication Date:

July 7, 2022

License:
Vigorous research activity in mHealth has resulted in an ever-growing list of physiological and behavioral markers. However, translation of these biomarkers into real time intervention lagged behind the observational research studies that led to their development due to computation, storage, and communication bottlenecks faced by wearables and smartphone platforms. Further, the next generation of wearables is emerging with the ability to sample data from multiple sensors at rates several orders of magnitude higher than current-generation devices, exacerbating the computational and communication bottleneck. They can image structure, motion, and function, to provide visibility into physiology previously possible only in clinics.

Traditionally, such imaging sensors use post-processing algorithms for feature identification, co-registration, alignment and enhancement. However, high frequency-high volume imaging data from wearables cannot be transported to cloud computing for post-processing. Finally, researchers have shown that the high-dimensionality sensor data needed to compute biomarkers present immense privacy risks. Advances in machine learning are leading to an ever-growing list of surprising inferences about user identity and activities that can be made from seemingly innocuous sensors, particularly when data are captured over long durations. Simplistic methods such as stripping personally identifiable information and addition of noise that focus on anonymizing the data have been ineffective for mHealth, both from privacy and utility perspectives, particularly with the availability of vast amounts of side information (e.g. metadata), computational power, and advanced algorithms.

To address these growing challenges, we propose a hierarchical computing framework that reduces the data into minimal modular abstractions called Micromarkers computed at the edge devices. Micromarkers can be used directly as features in new biomarker inferences or can be adapted to support legacy algorithms. TR&D3 is developing hardware, software, and computational techniques to implement privacy-aware, efficient, and embedded intelligence support into wearables. They will enable continuous, high-throughput, low latency biomarker captures across wearable, mobile, and cloud platforms to support large scale and long-term research studies, and eventual real-life rollout.

Tushar Agarwal, PhD

Senior ML Researcher


Siddharth Baskar, PhD

Sr. Hardware Engineer


Swapnil Sayan Saha, PhD

Algorithm Dev. Engineer


Md Azim Ullah, PhD

Applied Scientist


  1. Civek, Burak C., and Emre Ertin. Bayesian Sparse Blind Deconvolution Using MCMC Methods Based on Normal-Inverse-Gamma Prior. IEEE Transactions on Signal Processing 70 (2022): 1256-1269. NIHMS1839071.
  2. Saleheen, Nazir, Md Azim Ullah, Supriyo Chakraborty, Deniz S. Ones, Mani Srivastava, and Santosh Kumar. WristPrint: Characterizing User Re-identification Risks from Wrist-worn Accelerometry Data. In Proceedings of the 2021 ACM SIGSAC Conference on Computer and Communications Security, pp. 2807-2823. 2021. NIHMS1839082
  3. Liu, Renju, Luis Garcia, and Mani Srivastava. Aerogel: Lightweight Access Control Framework for WebAssembly-Based Bare-Metal IoT Devices. In 2021 IEEE/ACM Symposium on Edge Computing (SEC), pp. 94-105. IEEE, 2021. NIHMS1839084
  4. Saha, Swapnil Sayan, Sandeep Singh Sandha, Luis Antonio Garcia, and Mani Srivastava. Tinyodom: Hardware-Aware Efficient Neural Inertial Navigation. Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies 6, no. 2 (2022): 1-32. NIHMS1839164
  5. Saha, Swapnil Sayan, Sandeep Singh Sandha, Siyou Pei, Vivek Jain, Ziqi Wang, Yuchen Li, Ankur Sarker, and Mani Srivastava. Auritus: An Open-Source Optimization Toolkit for Training and Development of Human Movement Models and Filters Using Earables. Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies 6, no. 2 (2022): 1-34. NIHMS1839165
  6. Saha, Swapnil Sayan, Sandeep Singh Sandha, and Mani Srivastava. Machine Learning for Microcontroller-Class Hardware--A Review. arXiv preprint arXiv:2205.14550 (2022). Accepted for IEEE J. Sensors ’22.
  7. Saha, Swapnil Sayan, Sandeep Singh Sandha, Mohit Aggarwal, and Mani Srivastava. THIN-Bayes: Platform-Aware Machine Learning for Low-End IoT Devices. Poster at the tinyML Summit 2022.
  8. Bari R, Rahman MM, Saleheen N, Parsons MB, Buder EH, Kumar S. Automated Detection of Stressful Conversations Using Wearable Physiological and Inertial Sensors. Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies. 2020 December;4(4). PubMed PMID: 34099995; PubMed Central PMCID: PMC8180313; DOI: 10.1145/3432210.
  9. Akther, S., Saleheen, N., Saha, M., Shetty, V., & Kumar, S. (2021). mTeeth: Identifying Brushing Teeth Surfaces Using Wrist-Worn Inertial Sensors. Proceedings of the ACM on Interactive, Mobile, Wearable and Ubiquitous Technologies, 5 (2) DOI: 10.1145/3463494.
  10. Wang Z, Wang B, Srivastava M. Poster Abstract: Protecting User Data Privacy with Adversarial Perturbations. IPSN. 2021 May;2021:386-387. doi: 10.1145/3412382.3458776. PMID: 34651144; PMCID: PMC8513393.
  11. Agarwal T,  Ertin E. CardiacGen: A Hierarchical Deep Generative Model for Cardiac Signals. 2022. ArXiv, abs/2211.08385.
  12. Wenqiang Chen, Ziqi Wang, Pengrui Quan, Zhencan Peng, Shupei Lin, Mani Srivastava, Wojciech Matusik, and John Stankovic. 2023. Robust Finger Interactions with COTS Smartwatches via Unsupervised Siamese Adaptation. In Proceedings of the 36th Annual ACM Symposium on User Interface Software and Technology (UIST '23). Association for Computing Machinery, New York, NY, USA, Article 25, 1–14. DOI: 10.1145/3586183.3606794.
  13. Y. Chang, N. Sugavanam, E. Ertin. Removing Antenna Effects using an Invertible Neural Network for Improved Estimation of Multilayered Tissue Profiles using UWB Radar. 2023 IEEE USNC-URSI Radio Science Meeting (Joint with AP-S Symposium), Portland, OR, USA, 2023, pp. 53-54, DOI: 10.23919/USNC-URSI54200.2023.10289171.
  14. Kwon S, Wan N, Burns RD, Brusseau TA, Kim Y, Kumar S, Ertin E, Wetter DW, Lam CY, Wen M, Byun W. The Validity of MotionSense HRV in Estimating Sedentary Behavior and Physical Activity under Free-Living and Simulated Activity Settings. Sensors (Basel). 2021 Feb 18;21(4):1411. DOI: 10.3390/s21041411. PMID: 33670507; PMCID: PMC7922785.
  15. Swapnil Sayan Saha, Sandeep Singh Sandha, Mohit Aggarwal, Brian Wang, Liying Han, Julian de Gortari Briseno, and Mani Srivastava. 2023. TinyNS: Platform-Aware Neurosymbolic Auto Tiny Machine Learning. ACM Trans. Embed. Comput. Syst. Just Accepted (May 2023). https://doi.org/10.1145/3603171
  1. S.S. Saha, S.S. Sandha, S. Pei, V. Jain, Z. Wang, Y. Li, A. Sarker, M. Srivastava. Workshop: Excerpt of Auritus: An Open-Source Optimization Toolkit for Training and Development of Human Movement Models and Filters Using Earables. ACM EarComp Workshop, 2022. Cambridge, UK. 9/15/2022.

Santosh Kumar, PhD

Lead PI, Center Director, TR&D1, TR&D2, TR&D3


Yuyi Chang

Doctoral Student


Sugavanam Nithin

Doctoral Student


Akash Sing Deep

Doctoral Student


Brian Wang

Doctoral Student


Soumobrata Ghosh

Doctoral Student


Devan Mallory

Undergraduate Student